onMenuBarReady.fire([]); Candidatus Korarchaeum cryptofilum OPF8 1) Taxonomy ID: 374847 (for references in articles please use NCBI:txid374847) current name. Candidatus Korarchaeum cryptofilum OPF8: Mutation(s): 0 Gene Names: Kcr_0115: Find proteins for B1L7P8 (Korarchaeum cryptofilum (strain OPF8)) Explore B1L7P8 . addSiteSpecificMenuItems(); Candidatus Korarchaeum cryptofilum OPF8: Mutation(s): 0 Gene Names: Kcr_0115: Find proteins for B1L7P8 (Korarchaeum cryptofilum (strain OPF8)) Explore B1L7P8 . Anamika Kothari1, 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons), Caspi16: Caspi R, Billington R, Ferrer L, Foerster H, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Karp PD (2016). Korarchaeum cryptofilum. Candidatus Korarchaeum cryptofilum OPF8: Mutation(s): 0 Gene Names: Kcr_0115: Find proteins for B1L7P8 (Korarchaeum cryptofilum (strain OPF8)) Explore B1L7P8 . The connections link domains which form a pair. /* This code needs to be here to avoid the menu and other Yahoo widgets to flicker }); OPF8 Equivalent name Candidatus Korarchaeum cryptofilum strain OPF8 Scientific name Candidatus Korarchaeum cryptofilum OPF8 Synonym korarchaeote OPF1-KOR Synonym Korarchaeum cryptofilum OPF8. Candidatus Korarchaeum cryptofilum OPF8 (archaea) genome assembly ASM1960v1 from US DOE Joint Genome Institute [GCA_000019605.1 GCF_000019605.1] This reaction is the second ether-bond-formation step in the biosynthesis … Candidatus Korarchaeum cryptofilum OPF8, Unification Links: Go to UniProtKB: B1L7P8. Cells hybridizing to probes specific to the DNA sequences were ultrathin filaments under 0.2 um in diameter with an average length of 15 um, although cells were observed with lengths up to 100 um. Ligands 4 Unique; ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions; ADP Query on ADP. Natl. Kcr_1372 or Chromosome:1369724-1370401 or synthetase. Gene Kcr_0801 from Candidatus Korarchaeum cryptofilum OPF8: ABC-type branched-chain amino acid transport system, permease component Jump to section on this page: Summary Actions Predictions Experimental Validation Supporting Info Pathway Information Linked Genes phenotype. Summary: This Pathway/Genome Database (PGDB) was generated on 20-Sep-2017 from the annotated genome of Candidatus Korarchaeum cryptofilum OPF8, as obtained from … NCBI BioProject:PRJNA224116, Possible values are 'Standard', 'Close to Standard' and 'Outlier'.
,Genomic components encoding the proteome
, The European Molecular Biology Laboratory, State Secretariat for Education, Research and Innovation, Download one protein sequence per gene (FASTA), 374847 - Korarchaeum cryptofilum (strain OPF8), Proc. Candidatus Korarchaeum cryptofilum is an ultrathin filamentous heterotroph, mostly living through anaerobic metabolism of peptide fermentation and protein broken down into H2. This hyperthermophilic organism was isolated from sediment and hot spring samples from Obsidian Pool, Yellowstone National Park, USA. Taxonomic Lineage: Genome assembly: … We'd like to inform you that we have updated our Privacy Notice to comply Domain pairs in Candidatus Korarchaeum cryptofilum OPF8. on the screen. Unification Links: NCBI-Taxonomy:498846 . Ligands 2 Unique; ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions; COA Query on COA. Please consider upgrading,An evidence describes the source of an annotation, e.g. The genome of … "The pathway tools pathway prediction algorithm." Initiate the grant application process for experimentally validating this gene (Important notice about COMBREX grants.) Acad. Candidatus Korarchaeum cryptofilum OPF8 an uncharged tRNA How to Navigate: A class hierarchy (ontology) allows you to retrieve information according to categories of interest. TACK group, Go to UniProtKB: B1L7P8. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.
,The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the proteome. Information and statistics. Candidatus Korarchaeum cryptofilum: Taxonomy navigation › Candidatus Korarchaeum. Go to UniProtKB: B1L7P8. U.S.A. 105:8102-8107(2008), C:88.7%[S:88.7%,D:0%],F:2.6%,M:8.8%,n:194 archaea_odb10. Reviewed-Annotation score: -Protein inferred from homology i. It grows best at about 85 degrees Celsius, under strictly anaerobic conditions at pH 6.5. // Render the MenuBar instance Candidatus Korarchaeum cryptofilum OPF8. Log in and reload this page to access your saved database lists. [Caspi16]. Protein Feature View Expand: Reference Sequence; Small Molecules. // User sites can define this fn in userWebsiteCustomization.js in Summary: This Pathway/Genome Database (PGDB) was generated on 20-Sep-2017 from the annotated genome of Candidatus Korarchaeum cryptofilum OPF8, as obtained from … updateBannerClass(); Karp11] using MetaCyc version 21.1 However, the K. cryptofilum genome appears to be a hybrid of crenarchaeal and euryarchaeal genes and it is unclear if this is the result of horizontal gene transfer or evidence of a common … T number: T00668: Org code: kcr: Aliases: KORCO, 374847: Full name: Candidatus Korarchaeum cryptofilum: Definition: Candidatus Korarchaeum cryptofilum OPF8: Annotation }); Shift-click to select a range; Ctrl-click to select multiple non-contiguous organisms. Rank: strain "The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases." K. cryptofilum OPF8 is a member of a large group of deep-branching unclassified Archaea that may represent an entirely new archaeal kingdom (Korarchaeota). }); 1 SRI International . Peter D Karp1. an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc.
PMID: 22675592, Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). Function i. All lower taxonomy nodes (1) Common name i-Synonym i-Other names i ›"Candidatus Korarchaeum cryptofilum" Elkins et al. Candidatus Korarchaeum cryptofilum OPF8 uid58601; Predicted redox-active catalytic cysteine residues are highlighted in blue. Download Ideal … Candidatus Korarchaeum cryptofilum, */ The organism uses enzymes such as peptidase, transaminases, and ATPase. ©2019 SRI International, 333 Ravenswood Avenue, Menlo Park, CA 94025-3493 SRI … "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018. */ The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 21.5) Stand Genomic Sci 5(3);424-9. YAHOO.util.Event.onContentReady("pathwayToolsMenubar", function () { As it is at present uncultured it was assembled from whole genome shotgun sequencing. Korarchaeum cryptofilum K. cryptofilum OPF8 is a member of a large group of deep-branching unclassified Archaea that may represent an entirely new archaeal kingdom (Korarchaeota). Nucleic Acids Res 44(D1);D471-80. // Do this as early as possible to minimize flicker: ,When browsing through different UniProt proteins, you can use the 'basket' to save them, so that you can back to find or analyse them later.
,Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (more...)
,This is the total number of unique genes found in the proteome set, algorithmically computed. Candidatus Korarchaeum cryptofilum OPF8 (NCBI TaxID: 374847) Hide | Top. PMID: 26527732, Karp11: Karp PD, Latendresse M, Caspi R (2011). BUSCO scores include percentages of complete (C) single-copy (S) genes, complete (C) duplicated (D) genes, fragmented (F) and missing (F) genes, as well as the total number of orthologous clusters (n) used in the BUSCO assessment.
,Complete Proteome Detector (CPD) is an algorithm which employs statistical evaluation of the completeness and quality of proteomes in UniProt, by looking at the sizes of taxonomically close proteomes. Archaea, Protein Feature View Expand: Reference Sequence; Small Molecules. Database lists are saved as SmartTables that you can edit from your, ©2019 SRI International, 333 Ravenswood Avenue, Menlo Park, CA 94025-3493. Actions You Can Take. Candidatus Korarchaeum cryptofilum OPF8 Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information. Ligands 2 Unique; ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions; ADP Query on ADP. Summary of Candidatus Korarchaeum cryptofilum, Strain OPF8, version 24.5 . Download Ideal … NCBI-Taxonomy:374847, Genetic Code Number: It grows best at about 85 degrees Celsius, under strictly anaerobic conditions at pH 6.5. Direct sub-taxa of Candidatus Korarchaeum cryptofilum: Candidatus Korarchaeum cryptofilum OPF8. "Assignment of Homology to Genome … Download Ideal … YAHOO.util.Event.onAvailable("body", function () { Protein Feature View Expand: Reference Sequence; Small Molecules. 1 SRI International . Authors: Pallavi Subhraveti 1, Quang Ong 1, Ingrid Keseler 1, Anamika Kothari 1, Ron Caspi 1, Peter D Karp 1. OPF8 . Reviewed-Annotation score: -Protein inferred from homology i. Candidatus Korarchaeum cryptofilum OPF8 Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information. This Pathway/Genome Database (PGDB) was generated on 20-Sep-2017 from the annotated genome of Candidatus Korarchaeum cryptofilum OPF8, as obtained from RefSeq (annotation date: 17-APR-2017). Help pages, FAQs, UniProtKB manual, documents, news archive and Biocuration projects. Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, Hedlund BP, Brochier-Armanet C, Kunin V, Anderson I, et al. Candidatus Korarchaeum cryptofilum OPF8: Mutation(s): 0 Gene Names: Kcr_0115: Find proteins for B1L7P8 (Korarchaeum cryptofilum (strain OPF8)) Explore B1L7P8 . Protein Feature View Expand: Reference Sequence; Small Molecules. Provider European Nucleotide Archive | Taxonomy ID 374847. e.g. {autosubmenudisplay: true,
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